PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00957g00037.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C3H
Protein Properties Length: 679aa    MW: 73756.1 Da    PI: 6.979
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00957g00037.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.54e-07247267526
                               --SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                               +C+ f + G C  Gd+C +aHg
  Peaxi162Scf00957g00037.1 247 PCPEFKK-GACAKGDSCEYAHG 267
                               8******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF127966.6E-951121IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.11E-1454136IPR020683Ankyrin repeat-containing domain
SMARTSM002487.4E-45585IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.201.3E-1555153IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.7635579IPR002110Ankyrin repeat
PROSITE profilePS5029715.59255130IPR020683Ankyrin repeat-containing domain
CDDcd002045.04E-1457137No hitNo description
SMARTSM002480.002990122IPR002110Ankyrin repeat
PROSITE profilePS5008811.0690125IPR002110Ankyrin repeat
Gene3DG3DSA:4.10.1000.101.9E-4239268IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.019242269IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-5242268IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-4247267IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4274305IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.582277301IPR000571Zinc finger, CCCH-type
SMARTSM0035616277300IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MDKKDGASNS CSKLLELSAS DDLAGFICEV EKGCGIDELS FWYGRRIGSK KMVYEERTPL  60
MIASMYGSTE VLKYIVESGK VDVNRACGFD GATALHCAAA GGSESSIEVV KILIGASADV  120
YVCDASGNKP CDVIASYPKS LRNSKRKSLE LLLKGSLAEL AEEEEEEGIA AIQTMKEGSE  180
KKEYPIDTSL PDINDGIYGS DDFRMFCFKV KPCSRAYSHD WTECPFVHPG ENARRRDPRK  240
YNYTCVPCPE FKKGACAKGD SCEYAHGVFE SWLHPAQYRT RLCKDETGCP RKVCFFAHKP  300
EELRPLYAST GSAIPSPKAT PVSSMDMGTL SPLALGSSSM ILPATSTPPM SPAATCSSPM  360
GGNMWQGKVN PTPPALQLSG SRLKTSLNAR DLDLNMEMLG LQSIRTQQQL RQQLIDEMAG  420
LSSPSYWNKD NRIGDMKPTN LDDVFGSMDS PLLSQLQGLS PRVTSTTSSQ LYSPTVSHLQ  480
GLSPRVTNNT SQLQSPTGLQ MRQNMNQLQA SYSNMNQSSP LRTPSAYGFD SSAAVAAAVM  540
NSRSAAFAKR SQSFIDRSGM GHRAGPNGVA NSPPLMSSNM SDWGSPNGKL EWGFNSEDTN  600
KLKRSQSFGF RGGNGAPTRS PIAPSQVHEP DVSWVNSLVK DVSSTGTGLY SSEQKRGGVH  660
DAIPPWMEQM YIDQERIVA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5073200.0KM507320.1 Petunia x hybrida CCCH-type zinc-finger protein (TZF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015076207.10.0PREDICTED: zinc finger CCCH domain-containing protein 29-like
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A0X8ZWW60.0A0A0X8ZWW6_PETHY; CCCH-type zinc-finger protein
STRINGPGSC0003DMT4000698870.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25582245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein